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How to book Shopify sales in e-conomic

From order to invoice: shipping, discounts, gift cards, refunds and VAT from Shopify, correct in e-conomic — by hand and automatically.

Updated October 20, 2026

Every order in Shopify is a sale that belongs in the books: with the right VAT, in the right period, and with a customer who can get a credit note if the goods come back. This guide shows how Shopify sales get into e-conomic correctly, both when you do it by hand and when it happens automatically.

Two ways to get Shopify sales into e-conomic

There are two basic ways to do it:

If you have more than a handful of orders a week, or sell to other EU countries, one invoice per order is nearly always right. The rest of this guide is about that.

By hand: one invoice per order

  1. Find or create the customer. Search your debtors in e-conomic by email or name. If the customer is not there, create them with the billing address from the order.
  2. Create an invoice with the order's lines. Shopify usually shows prices including VAT, but e-conomic works out the invoice excluding VAT. Divide each price by 1.25 for goods at 25% VAT, and use product numbers that exist in e-conomic, so the goods land in the right product group.
  3. Shipping on a line of its own. Shipping is part of the sale and carries the same VAT as the goods.
  4. Discounts. Write the list price and the discount in percent, so the customer sees what was given, instead of writing the reduced price straight away.
  5. Choose the VAT zone. It depends on where the customer lives and the VAT Shopify charged. See the next section.
  6. Check the total. The invoice's total must be exactly what the customer paid in Shopify, to the øre. A difference nearly always means a wrong VAT rate or a missing line.
  7. Book and send. The invoice date is the order date, so the sale falls in the right VAT period.

Example: order #1042

A customer in Denmark buys two bags of coffee beans at DKK 199.00 and a coffee grinder at DKK 449.00 with 10% off, plus shipping at DKK 49.00. The customer pays DKK 851.10. The invoice in e-conomic looks like this:

LineQtyAmount excl. VAT
Coffee beans, 1 kg2318.40
Coffee grinder (list price 359.20, discount 10%)1323.28
Shipping139.20
VAT 25%170.22
Total851.10

The total excluding VAT is DKK 680.88, the VAT DKK 170.22, and the total is the DKK 851.10 the customer paid.

VAT: Denmark, the EU, OSS and export

Shopify works out VAT from the shop's tax settings, so check that they fit your registration, especially above the OSS threshold. The VAT on the invoice must be the VAT Shopify actually charged, not what the customer's old debtor card in e-conomic points to.

Refunds, gift cards and fees

If you are unsure about VAT on gift cards or OSS, ask your accountant. The rules depend on what the gift card can be used for and on your total sales.

Common mistakes

Automatically with 2app

2app makes the same invoice for each order: customer, lines by product number, shipping, discount and VAT per country, OSS too. The total is held against what the customer paid, to the øre, and an order that does not match stops with an explanation instead of being sent. Refunds become credit notes, and gift cards become a payment on a VAT-free product number. You see the first invoices in a preview before anything is sent to e-conomic.

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